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Publikacije (37531)

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Ivan Brdar, Anita Racetin, I. Jeličić, Katarina Vukojević, L. Vučković, D. Ljutić, M. Saraga-Babic, N. Filipović

Autophagy is the primary intracellular degradation system, and it plays an important role in many biological and pathological processes. Studies of autophagy involvement in developmental processes are important for understanding various processes. Among them are fibrosis, degenerative diseases, cancer development, and metastasis formation. Diabetic kidney disease is one of the main causes of chronic kidney disease and end-stage renal failure. The aim of this study was to investigate the immunohistochemical expression patterns of LC3B, LAMP2A, and GRP78 during different developmental stages of early-developing human kidneys and in samples from patients with type II diabetes mellitus. During the 7/8th DW, moderate expression of LC3B and LAMP2A and strong expression of GRP78 were found in the mesonephric glomeruli and tubules. In the 9/10th DW, the expression of LC3B and LAMP2A was even more pronounced in the mesonephric tubules. LC3B, LAMP2A, and GRP78 immunoreactivity was also found in the paramesonephric and mesonephric ducts and was stronger in the 9/10th DW compared with the 7/8th DW. In addition, the expression of LC3B, LAMP2A, and GRP78 also appeared in the mesenchyme surrounding the paramesonephric duct in the 9/10th DW. In the 15/16th DW, the expression of LC3B in the glomeruli was weak, that of LAMP2A was moderate, and that of GRP78 was strong. In the tubuli, the expression of LC3B was moderate, while the expression of LAMP2A and GRP78 was strong. The strongest expression of LC3B, LAMP2A, and GRP78 was observed in the renal medullary structures, including developing blood vessels. In postnatal human kidneys, the most extensive LC3B, LAMP2A, and GRP78 expression in the cortex was found in the epithelium of the proximal convoluted tubules, with weak to moderate expression in the glomeruli. The medullary expression of LC3B was weak, but the expression of LAMP2A and GRP78 was the strongest in the medullary tubular structures. Significantly lower expression of LC3B was found in the glomeruli of the diabetic patients in comparison with the nondiabetic patients, but there was no difference in the expression of LC3B in the tubule–interstitial compartment. The expression of LAMP2A was significantly higher in the tubule–interstitial compartments of the diabetic patients in comparison with the nondiabetic patients, while its expression did not differ in the glomeruli. Extensive expression of GRP78 was found in the glomeruli and the tubule–interstitial compartments, but there was no difference in the expression between the two groups of patients. These data give us new information about the expression of LC3B, LAMP2A, and GRP78 during embryonic, fetal, and early postnatal development. The spatiotemporal expression of LC3B, LAMP2A, and GRP78 indicates the important role of autophagy during the early stages of renal development. In addition, our data suggest a disturbance in autophagy processes in the glomeruli and tubuli of diabetic kidneys as an important factor in the pathogenesis of diabetic kidney disease.

M. K. Ford, Ananth Hari, Qinghui Zhou, Ibrahim Numanagić, S. C. Sahinalp

Natural killer (NK) cells are essential components of the innate immune system, with their activity significantly regulated by Killer cell Immunoglobulin-like Receptors (KIRs). The diversity and structural complexity of KIR genes present significant challenges for accurate genotyping, essential for understanding NK cell functions and their implications in health and disease. Traditional genotyping methods struggle with the variable nature of KIR genes, leading to inaccuracies that can impede immunogenetic research. These challenges extend to high-quality phased assemblies, which have been recently popularized by the Human Pangenome Consortium. This paper introduces BAKIR (Biologically-informed Annotator for KIR locus), a tailored computational tool designed to overcome the challenges of KIR genotyping and annotation on high-quality, phased genome assemblies. BAKIR aims to enhance the accuracy of KIR gene annotations by structuring its annotation pipeline around identifying key functional mutations, thereby improving the identification and subsequent relevance of gene and allele calls. It uses a multi-stage mapping, alignment, and variant calling process to ensure high-precision gene and allele identification, while also maintaining high recall for sequences that are significantly mutated or truncated relative to the known allele database. BAKIR has been evaluated on a subset of the HPRC assemblies, where BAKIR was able to improve many of the associated annotations and call novel variants. BAKIR is freely available on GitHub, offering ease of access and use through multiple installation methods, including pip, conda, and singularity container, and is equipped with a user-friendly command-line interface, thereby promoting its adoption in the scientific community.

Guillermo Pérez García, G. A. García, Manuel Castro, Mario Castaño, Marta J. López-González de Quevedo, Ricardo Durán, Luis Pérez, J. G. Amores et al.

The quantum-mechanical transition amplitudes for atomic and molecular processes in strong laser fields are expressed in the form of multidimensional integrals of highly oscillatory functions. Such integrals are ideally suited for the evaluation by asymptotic methods for integrals. Furthermore, using these methods it is possible to identify, in the sense of Feynman’s path-integral formalism, the partial contributions of quantum orbits, which are related to particular solutions of the saddle-point equations. This affords insight into the physics of the problem, which would not have been possible by only solving these integrals numerically. We apply the saddle-point method to various quantum processes that are important in strong-field physics and attoscience. The special case of coalescing or near-coalescing saddle points requires application of the uniform approximation. We also present two modifications of the saddle-point method, for the cases where a singular point of the subintegral function exactly overlaps with a saddle point or is located in its close vicinity. Particular emphasis is on the classification of the saddle-point solutions. This problem is solved for the one-dimensional integral over the ionization time, relevant for above-threshold ionization (ATI), while for two-dimensional integrals a classification by the multi-index (α,β,m) is introduced, which is particularly useful for the medium- and high-energy spectrum of high-order harmonic generation (HHG) and backward-scattered electrons (for high-order ATI). For the low-energy structures a classification using the multi-index (ν,ρ,μ) is introduced for the forward-scattering quantum orbits. In addition to laser-induced processes such as ATI, HHG and high-order ATI, we consider laser-assisted scattering as an example of laser-assisted processes for which real solutions of the saddle-point equation exist. Particular attention is devoted to the quantum orbits that describe and visualize these processes. We also consider finite laser pulses, the semiclassical approximation, the role of the Coulomb field and the case of laser fields intense enough to lead into the relativistic regime.

Mario Situm, Giuseppe Sorrentino, Jasmina Mangafic, Lejla Lazović-Pita

As urbanization increases, cities face challenges related to sustainability and mobility. This study, conducted through interviews in March and April 2023, investigates the implementation of smart mobility solutions in German-speaking cities (Austria, Germany, and Switzerland) and Sarajevo, Bosnia and Herzegovina, through a comparative analysis of stakeholder perspectives. Using semi-structured interviews with 25 experts, we explored the opportunities and challenges associated with smart mobility in these distinct socio-economic contexts. The findings reveal significant differences in technological advancement, infrastructural support, and financial resources, providing valuable insights for policymakers and urban planners. This study contributes to the existing literature by bridging the gap between developed and developing regions, offering practical recommendations for achieving sustainable urban transportation systems.

Emina Mehmedović, Amela Bećirović, Halid Junuzović, H. Keran, Asmira Čanić

Nigella sativa is a herb that has been used for centuries to treat various ailments, including infectious diseases. The aim of this work was to show in laboratory conditions the influence of different temperature regimes and methods of storage of Nigella Sativa oils on their physicochemical properties and microbiological stability. Analyzes have established that the temperature and method of storage have a significant influence on the change in the quality of the oil, especially when it comes to the total acidity of the oil and the peroxide value, where the values increased with the time of storage. The lowest obtained value for the peroxide number was at the first measurement, Pb = 9.99, which meets the prescribed standards for safe use, then the highest obtained value was 34.47 for the sample that was constantly exposed to the sun in a bright bottle. Also, the values of the iodine number increased with time, where the lowest value obtained was 14.56, and the highest was 102.48. Therefore, it is extremely important that the oil is stored in suitable packaging in dark glass bottles, and that it is protected from direct sunlight and high temperatures.

Elmin Marevac, E. Kadušić, C. Ruland, Nataša Živić

Efficient and sustainable electrical grids are crucial for energy management in modern society and industry. Govern-ments recognize this and prioritize energy management in their plans, alongside significant progress made in theory and practice over the years. The complexity of power systems determines the unique nature of power communication networks, and most researches have been focusing on the dynamic nature of voltage stability, which led to the need for dynamic models of power systems. Control strategies based on stability assessments have become essential for managing grid stability, diverging from traditional methods and often leveraging advanced computational techniques based on deep learning algorithms and neural networks. This way, researchers can develop predictive models capable of forecasting voltage stability and detecting potential instability events in real-time, whereas neural networks can also optimize control strategies based on wide-area information and grid response, enabling more effective stability control measures, as well as detecting and classifying disturbances or faults in the grid. This paper explores the use of predictive models to assess smart grid stability, examining the benefits, risks, and comparing results to determine the most effective approach.

Lejla Ušanović, Lejla Lasić, N. Pojskić, Dalila Destanović, Jasna Hanjalić Kurtović, B. Kalamujić Stroil

ABSTRACT Borrelia burgdorferi sensu lato complex comprises 20 species, from which B. afzelii, B. garinii, B. burgdorferi sensu stricto, B. bavariensis, and B. spielmanii are directly associated with Lyme borreliosis, while B. bissettiae, B. lusitaniae, and B. valaisiana were detected in individual cases. Their main vector in Europe is the hard tick species Ixodes ricinus. To date, two species, B. spielmanii and B. lusitaniae, have been molecularly detected in Bosnia and Herzegovina. To test for the presence of other Borrelia species, we performed nested PCR targeting intergenic region rrf (5S) – rrl (23S) on DNA isolates from 49 ticks collected from vegetation by flagging method and 43 removed from humans in The Center for Emergency Medical Assistance of the Sarajevo Canton and The Healthcare Centers of the Sarajevo Canton. Borrelia species were detected by one-directional Sanger sequencing of the amplified region using the same forward primer as in PCR. Out of six Borrelia species detected in the present study, this is the first record of B. afzelii, B. garinii, B. burgdorferi s.s. B. bavariensis, and B. valaisiana in Bosnia and Herzegovina.

Senad Murtić, L. Karić, Ćerima Zahirović Sinanović, Anis Hasanbegović, Jasna Avdić, Amina Šerbo, Adnan Hadžić

The aim of this study was to assess the ability of oyster mushrooms (Pleurotus ostreatus (Jacq.) P. Kumm.) to absorb heavy metals (Fe, Zn, Cu, Co, Mn, Ni, Cr, Cd, and Pb) from different plant-based substrates and to determine the bioaccumulation factor of the aforementioned heavy metals from the substrate to the oyster mushroom basidiomes. The substrate used in this study were: maize straw, beech sawdust supplemented with wheat bran at a rate of 20%, a mixture of maize straw and spent coffee grounds in a ratio of 70:30, and a mixture of maize straw and spent coffee grounds in a ratio of 50:50. Heavy metal contents in substrate and mushroom samples were analyzed by atomic absorption spectroscopy using the Shimadzu AA-7000 device, while the bioaccumulation factors of oyster mushroom for each investigated heavy metal were calculated from the heavy metal content in mushrooms divided by that found in substrates. The study showed that oyster mushrooms have a high capacity to absorb Zn and Cd from the growing medium and bioaccumulation factor values for Zn and Cd determined in this study strongly support this observation. On the other hand, bioaccumulation factor values for Ni, Fe, and Mn were less than 0.3 and ranged from 0.04 to 0.05, from 0.09 to 0.12, and from 0.10 to 0.25, respectively. In general, the results of this study lead to the conclusion that substrate chemical composition strongly affects the heavy metal accumulation in oyster mushroom basidiomes. The results of this study also showed that oyster mushrooms can be considered a promising species for Cd and Zn bioremediation.

Zineta Mulaosmanović, Aida Pilav, Elmedina Mrkulić, S. Branković, Jasmina Mahmutović, Hadžan Konjo

Uvod: Pandemija COVID-19 pokazala je nedostatke zdravstvenih sustava na globalnoj razini, a najveći utjecaj pandemije doživjeli su zdravstveni profesionalci koji rade u izravnom kontaktu s oboljelim pacijentima. Cilj: Cilj je rada ispitati stavove i mišljenja zdravstvenih profesionalaca koji rade u ruralnim i urbanim područjima Kantona Sarajevo o mjerama zaštite na radnom mjestu, zdravstvenom kadru i organizaciji rada tijekom pandemije COVID-19 od strane nadležnih institucija. Metode: Ispitani su zdravstveni profesionalci koji rade u urbanim i ruralnim područjima u Kantonu Sarajevo koristeći anonimne anketne upitnike čija je osnova bila check lista za provjeru spremnosti zdravstvenih ustanova za pandemiju COVID-19 koju je kreirala Svjetska zdravstvena organizacija. Kriterij za uključivanje u studiju bio je dobrovoljni pristanak ispitanika da sudjeluju u istraživanju. Rezultati: Analiza ustanove i spremnosti sustava na COVID-19 pandemiju ukazala je na mnoge nedostatke zdravstvenog sustava u Kantonu Sarajevo. Utvrđen je umjeren rizik kod odgovora zdravstvenog sustava primarne zdravstvene zaštite na području cijelog Kantona, s tim da je značajno veći rizik utvrđen u urbanim dijelovima Kantona. Utvrđena je značajna statistička razlika u ukupnom riziku (p < 0,001). Na skali od 8 do 40, ukupan rizik u urbanim sredinama iznosio je 21,95 (19 – 25), dok je u ruralnim sredinama iznosio 19,3 (16 – 23). Zaključak: Uvažavanje stavova i mišljenja zdravstvenih profesionalaca koji rade u izravnom kontaktu s pacijentima trebalo bi biti temelj za donošenje odluka u javnoj zdravstvenoj politici. U našoj se studiji, ali i ranije opisanim studijama, uočava pojam adaptabilnosti koji ukazuje na to da se, prema prijašnjim iskustvima, trebaju napraviti korektivne mjere kako bi zdravstveni sustav bio spreman za moguće epidemije i pandemije u budućnosti.

Introduction: With the continuous aging of the population of Western societies, an increase is expected not only in the number of patients with diabetes but also in the number of patients with comorbidities. Population studies suggest that most patients with diabetes have at least one comorbidity. Comorbidities can profoundly impact a person’s ability to care for himself/herself and can present barriers to adherence to lifestyle changes and compliance with therapy. Methods: The research was conducted in the Public Institution Health Centre of Sarajevo Canton - Health Center Hadžići and Health Center Novi Grad. It included 161 patients diagnosed with diabetes; 96 women and 65 men.The respondents were between 18 and 65 years old (the upper age limit for the working population for both genders). The instruments for conducting the research were a questionnaire on the socio-demographic characteristics of the respondents and Ferrans and Powers index of quality of life, a version for diabetes. Results: The research included 43.48% of respondents with diabetes mellitus (DM) Type II, 31.06% with DM Type I, while even 25.46% of respondents did not know which type of diabetes they suffered from. There were no statistically significant differences in the Total Quality of Life Index (TQLI) (p=0.328) between respondents with different types of diabetes. The average TQLI value in the group with diabetes duration from 1 to 5 years was 22.07 +/- 5.10; in the group from 6 to10 years was 21.23 +/- 6.0; in the group from 11 to 20 years was 21.86 +/- 4.82; in the group from 21 to 30 years was 19.20 +/- 6.81; and in the group with diabetes duration >30 years, was 23.36 +/- 5.46. High blood pressure was present in 60.24% of respondents, followed by elevated blood fats in 51.55% of respondents, and heart/brain blood vessel diseases, in 43.48% of respondents. Neuropathies were present in 38.5%, visual impairment in 26.08%, and malignant diseases were present in a total of 14.28% of respondents. Conclusion: The average value of the quality of life of respondents with 1 comorbidity was 21.30; with 2 comorbidities 20.91; and with 3 comorbidities was 21.94. There was no statistically significant difference in the quality of life of diabetes patients about the presence of one, two, or more comorbidities (p=0.537). The presence of a greater number of comorbidities in patients with diabetes does not contribute to poor quality of life.

A. Mujanović, Anick Imhof, Shaokai Zheng, E. Piechowiak, B. Serrallach, T. Meinel, T. Dobrocky, Yasmin N. Aziz et al.

BACKGROUND: Perfusion abnormalities in the infarct and salvaged penumbra have been proposed as a potential reason for poor clinical outcome (modified Rankin Scale score >2) despite complete angiographic reperfusion (Thrombolysis in Cerebral Infarction [TICI3]). In this study, we aimed to identify different microvascular perfusion patterns and their association with clinical outcomes among TICI3 patients. METHODS: University Hospital Bern’s stroke registry of all patients between February 2015 and December 2021. Macrovascular reperfusion was graded using the TICI scale. Microvascular reperfusion status was evaluated within the infarct area on cerebral blood volume and cerebral blood flow perfusion maps obtained 24-hour postintervention. Primary outcome was functional independence (90-day modified Rankin Scale score 0–2) evaluated with the logistic regression analysis adjusted for age, sex, and 24-hour infarct volume from follow-up imaging. RESULTS: Based on microvascular perfusion findings, the entire cohort (N=248) was stratified into one of the 4 clusters: (1) normoperfusion (no perfusion abnormalities; n=143/248); (2) hyperperfusion (hyperperfusion on both cerebral blood volume and cerebral blood flow; n=54/248); (3) hypoperfusion (hypoperfusion on both cerebral blood volume and cerebral blood flow; n=14/248); and (4) mixed (discrepant findings, eg, cerebral blood volume hypoperfusion and cerebral blood flow hyperperfusion; n=37/248). Compared with the normoperfusion cluster, patients in the hypoperfusion cluster were less likely to achieve functional independence (adjusted odds ratio, 0.3 [95% CI, 0.1–0.9]), while patients in the hyperperfusion cluster tended to have better outcomes (adjusted odds ratio, 3.3 [95% CI, 1.3–8.8]). CONCLUSIONS: In around half of TICI3 patients, perfusion abnormalities on the microvascular level can be observed. Microvascular hypoperfusion, despite complete macrovascular reperfusion, is rare but may explain the poor clinical course among some TICI3 patients, while a detrimental effect of hyperperfusion after reperfusion could not be confirmed.

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