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Publikacije (46028)

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S. Malikić, S. Malikić, Katharina Jahn, Katharina Jahn, J. Kuipers, J. Kuipers, S. C. Sahinalp, N. Beerenwinkel et al.

Understanding the clonal architecture and evolutionary history of a tumour poses one of the key challenges to overcome treatment failure due to resistant cell populations. Previously, studies on subclonal tumour evolution have been primarily based on bulk sequencing and in some recent cases on single-cell sequencing data. Either data type alone has shortcomings with regard to this task, but methods integrating both data types have been lacking. Here, we present B-SCITE, the first computational approach that infers tumour phylogenies from combined single-cell and bulk sequencing data. Using a comprehensive set of simulated data, we show that B-SCITE systematically outperforms existing methods with respect to tree reconstruction accuracy and subclone identification. B-SCITE provides high-fidelity reconstructions even with a modest number of single cells and in cases where bulk allele frequencies are affected by copy number changes. On real tumour data, B-SCITE generated mutation histories show high concordance with expert generated trees. Intra-tumour heterogeneity provides important information about subclonal tumour evolution. Here, the authors develop B-SCITE, a computational method for inferring tumour phylogenies from combined single-cell and bulk sequencing data.

Kürşad Özbek, Sevinç Karabak, Nurcan Guzelsoy, Nurgül Sari, R. Duran, Rahmi Taşçı, Birgul Guner, Hilal Yucearslan et al.

M. Vukojevič, A. Zovko, Ivana Talić, Merima Tanović, B. Rešić, I. Vrdoljak, B. Splavski

Parental socioeconomic status is a multidimensional concept of special importance for the growth, development, health outcomes and education of children. Its definition generally refers to the amount of parents' income, their employment status and level of education. Hence, lack of economic resources and poverty of parents affect all aspects of the child's life, health outcomes and education, as well as his/her social inclusion. Accordingly, the consequences of a reduced parental socioeconomic status leave long-term effects on their children. Therefore, in order to create interventional programs for children of parents with low income and lower socioeconomic status, as well as with lower level of education, it is important to address the direct aspects of poverty. This review contributes to the evidence indicating that the parental socioeconomic status is highly influential in determining the child's physical and mental health and future outcomes including his/her academic achievements and education, as well as the parameters of his/her physical abilities, cognitive function and fundamental neurobiology affecting brain development.

Andrea S. Gomoll, S. Šabanović, Erin Tolar, C. Hmelo‐Silver, M. Francisco, Orion Lawlor

N. Efendić, D. Gavrilović, Vjollca Krasniqi, O. Obad, Ines Prica, Tea Škokić

M. Kovačič, A. Turnsek, D. Ocvirk, G. Gantar

[tore Steel Ltd. is one of the largest spring-steel producers in Europe. [tore Steel makes more than 1400 steel grades of different chemical composition. Among them is 16MnCrS5 steel. It is generally used for the fabrication of case-hardened machine parts for various applications (e.g., bars, rods, plates, strips, forgings), where a combination of wear resistance, toughness and dynamic strength is essential. These properties can be easily correlated with tensile strength, which depends on the chemical composition and heat treatment after rolling. In addition, the elongation should be taken into account. In the paper, modeling of tensile strength and elongation with genetic programming is presented and compared with linear regression modeling. The chemical composition data (content of C, Mn, S and Cr) and the heat-treatment regime data (GKZ or BG annealing) were used for modeling. The modeling results show that a higher tensile strength with improved elongation were achieved.

M. Pavlović, M. Dojčinović, S. Martinović, M. Vlahović, Z. Stević, M. Jovanović, T. Volkov-Husović

Mechanical shock of zircon based ceramic induced by cavitation erosion testing was investigated in this study. Several parameters were followed in order to determine level of material degradation during the cavitation erosion testing. Mass loss was taken as a conventional criterion for material degradation, while the level of surface degradation was evaluated by image and thermal imaging analyses. Results show high cavitation resistance of zircon ceramics and their suitability when vigorous cavitation erosion environment is expected.

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